Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
LOC113022123Copine I. (535 aa)    
Predicted Functional Partners:
LOC113026770
OTU deubiquitinase 7A.
    
 
 0.737
llgl2
LLGL scribble cell polarity complex component 2.
      
 0.712
LOC113037195
Uncharacterized protein.
      
 0.655
ENSACLP00000011298
Uncharacterized protein.
      
 0.655
LOC113037196
Glutaredoxin 5 homolog (S. cerevisiae).
      
 0.654
LOC113037196-2
Glutaredoxin-related protein 5, mitochondrial-like.
      
 0.654
nfs1
NFS1 cysteine desulfurase.
      
 0.646
rnaseh2b
Ribonuclease H2, subunit B.
   
 
 0.627
rnaseh2a
Ribonuclease; Endonuclease that specifically degrades the RNA of RNA-DNA hybrids; Belongs to the RNase HII family.
   
 
 0.571
pik3c3
Phosphatidylinositol 3-kinase catalytic subunit type 3.
    
 0.555
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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