LOC113011731 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113011731

RAB32b, member RAS oncogene family. (218 aa)

Predicted Functional Partners:

rabggta

0.718

gak

0.690

ankrd27

0.687

LOC113029983

0.648

ENSACLP00000003376

0.648

ptar1

0.630

ENSACLP00000014594

0.573

LOC113008660

0.553

LOC113012979

0.553

LOC113022446

0.553

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003376	LOC113008660	ENSACLP00000003376	ENSACLP00000019409	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	LOC113011731	ENSACLP00000003376	ENSACLP00000005781	Uncharacterized protein.	RAB32b, member RAS oncogene family.	0.648
ENSACLP00000003376	LOC113012979	ENSACLP00000003376	ENSACLP00000025406	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	LOC113022446	ENSACLP00000003376	ENSACLP00000031257	Uncharacterized protein.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.616
ENSACLP00000003376	ankrd27	ENSACLP00000003376	ENSACLP00000035175	Uncharacterized protein.	Ankyrin repeat domain 27 (VPS9 domain).	0.515
ENSACLP00000003376	ptar1	ENSACLP00000003376	ENSACLP00000025856	Uncharacterized protein.	Protein prenyltransferase alpha subunit repeat containing 1.	0.949
ENSACLP00000003376	rabggta	ENSACLP00000003376	ENSACLP00000021705	Uncharacterized protein.	Rab geranylgeranyltransferase subunit alpha.	0.978
ENSACLP00000014594	LOC113011731	ENSACLP00000014594	ENSACLP00000005781	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	RAB32b, member RAS oncogene family.	0.573
LOC113008660	ENSACLP00000003376	ENSACLP00000019409	ENSACLP00000003376	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Uncharacterized protein.	0.616
LOC113008660	LOC113011731	ENSACLP00000019409	ENSACLP00000005781	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	RAB32b, member RAS oncogene family.	0.553
LOC113008660	LOC113029983	ENSACLP00000019409	ENSACLP00000002929	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.616
LOC113008660	ankrd27	ENSACLP00000019409	ENSACLP00000035175	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Ankyrin repeat domain 27 (VPS9 domain).	0.559
LOC113008660	ptar1	ENSACLP00000019409	ENSACLP00000025856	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Protein prenyltransferase alpha subunit repeat containing 1.	0.678
LOC113008660	rabggta	ENSACLP00000019409	ENSACLP00000021705	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	Rab geranylgeranyltransferase subunit alpha.	0.678
LOC113011731	ENSACLP00000003376	ENSACLP00000005781	ENSACLP00000003376	RAB32b, member RAS oncogene family.	Uncharacterized protein.	0.648
LOC113011731	ENSACLP00000014594	ENSACLP00000005781	ENSACLP00000014594	RAB32b, member RAS oncogene family.	HPS1 biogenesis of lysosomal organelles complex 3 subunit 1.	0.573
LOC113011731	LOC113008660	ENSACLP00000005781	ENSACLP00000019409	RAB32b, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.553
LOC113011731	LOC113012979	ENSACLP00000005781	ENSACLP00000025406	RAB32b, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.553
LOC113011731	LOC113022446	ENSACLP00000005781	ENSACLP00000031257	RAB32b, member RAS oncogene family.	Rab GDP dissociation inhibitor; Regulates the GDP/GTP exchange reaction of most RAB proteins by inhibiting the dissociation of GDP from them, and the subsequent binding of GTP; Belongs to the Rab GDI family.	0.553
LOC113011731	LOC113029983	ENSACLP00000005781	ENSACLP00000002929	RAB32b, member RAS oncogene family.	Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.	0.648