STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
olfml3Olfactomedin-like 3b. (389 aa)    
Predicted Functional Partners:
LOC113027310
Transmembrane protein 119b.
   
  
 0.907
LOC113036280
Purinergic receptor P2Y12.
   
  
 0.904
LOC113022140
Osteoglycin, paralog a.
   
 
 0.693
LOC113014005
Osteoglycin, paralog b.
   
 
 0.693
cdk5
Cyclin-dependent kinase 5; Belongs to the protein kinase superfamily.
      
 0.678
tspo
Translocator protein.
      
 0.654
tyrobp
Uncharacterized protein.
      
 0.613
bcas2
BCAS2 pre-mRNA processing factor.
      
 0.612
ENSACLP00000012734
40S ribosomal protein S21; Belongs to the eukaryotic ribosomal protein eS21 family.
      
 0.559
dclre1b
DNA cross-link repair 1B.
      
 0.522
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.