zranb1 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

zranb1

Zinc finger, RAN-binding domain containing 1a. (712 aa)

Predicted Functional Partners:

RPS27A

0.900

uba52

0.889

traf6

0.866

ENSACLP00000035637

0.858

ENSACLP00000009605

0.827

LOC113030103

0.827

ripk4

0.814

ENSACLP00000003770

0.794

LOC113031642

0.779

apc2

0.705

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000003770	ENSACLP00000009605	ENSACLP00000003770	ENSACLP00000009605	TNFAIP3 interacting protein 1.	Ubiquitin B.	0.850
ENSACLP00000003770	LOC113030103	ENSACLP00000003770	ENSACLP00000014166	TNFAIP3 interacting protein 1.	Uncharacterized protein.	0.850
ENSACLP00000003770	LOC113031642	ENSACLP00000003770	ENSACLP00000015585	TNFAIP3 interacting protein 1.	Tumor necrosis factor b (TNF superfamily, member 2).	0.959
ENSACLP00000003770	zranb1	ENSACLP00000003770	ENSACLP00000005797	TNFAIP3 interacting protein 1.	Zinc finger, RAN-binding domain containing 1a.	0.794
ENSACLP00000009605	ENSACLP00000003770	ENSACLP00000009605	ENSACLP00000003770	Ubiquitin B.	TNFAIP3 interacting protein 1.	0.850
ENSACLP00000009605	ENSACLP00000035637	ENSACLP00000009605	ENSACLP00000035637	Ubiquitin B.	UBX domain-containing protein 7.	0.913
ENSACLP00000009605	LOC113031642	ENSACLP00000009605	ENSACLP00000015585	Ubiquitin B.	Tumor necrosis factor b (TNF superfamily, member 2).	0.928
ENSACLP00000009605	RPS27A	ENSACLP00000009605	ENSACLP00000004031	Ubiquitin B.	Ribosomal protein S27a.	0.986
ENSACLP00000009605	ripk4	ENSACLP00000009605	ENSACLP00000039319	Ubiquitin B.	Receptor-interacting serine-threonine kinase 4.	0.743
ENSACLP00000009605	traf6	ENSACLP00000009605	ENSACLP00000016510	Ubiquitin B.	TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.	0.962
ENSACLP00000009605	uba52	ENSACLP00000009605	ENSACLP00000032826	Ubiquitin B.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.992
ENSACLP00000009605	zranb1	ENSACLP00000009605	ENSACLP00000005797	Ubiquitin B.	Zinc finger, RAN-binding domain containing 1a.	0.827
ENSACLP00000035637	ENSACLP00000009605	ENSACLP00000035637	ENSACLP00000009605	UBX domain-containing protein 7.	Ubiquitin B.	0.913
ENSACLP00000035637	LOC113030103	ENSACLP00000035637	ENSACLP00000014166	UBX domain-containing protein 7.	Uncharacterized protein.	0.913
ENSACLP00000035637	RPS27A	ENSACLP00000035637	ENSACLP00000004031	UBX domain-containing protein 7.	Ribosomal protein S27a.	0.995
ENSACLP00000035637	ripk4	ENSACLP00000035637	ENSACLP00000039319	UBX domain-containing protein 7.	Receptor-interacting serine-threonine kinase 4.	0.684
ENSACLP00000035637	uba52	ENSACLP00000035637	ENSACLP00000032826	UBX domain-containing protein 7.	Ubiquitin A-52 residue ribosomal protein fusion product 1.	0.988
ENSACLP00000035637	zranb1	ENSACLP00000035637	ENSACLP00000005797	UBX domain-containing protein 7.	Zinc finger, RAN-binding domain containing 1a.	0.858
LOC113030103	ENSACLP00000003770	ENSACLP00000014166	ENSACLP00000003770	Uncharacterized protein.	TNFAIP3 interacting protein 1.	0.850
LOC113030103	ENSACLP00000035637	ENSACLP00000014166	ENSACLP00000035637	Uncharacterized protein.	UBX domain-containing protein 7.	0.913