STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113011728Glutamate receptor, metabotropic 1b. (1180 aa)    
Predicted Functional Partners:
LOC113033109
Homer scaffold protein 1b.
    
 0.977
LOC113010015
WH1 domain-containing protein.
    
 0.928
ENSACLP00000033147
Homer scaffold protein 3b.
    
 0.928
homer2
Homer scaffold protein 2.
    
  0.881
HOMER1
Homer scaffold protein 1.
    
  0.881
ncdn
Neurochondrin.
   
 0.880
LOC113033130
Uncharacterized protein.
    
 0.880
AGAP2
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
  0.871
LOC113013301
ArfGAP with GTPase domain, ankyrin repeat and PH domain 2.
    
  0.871
GNAZ
G protein subunit alpha z.
   
  0.870
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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