ENSACLP00000005819 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

ENSACLP00000005819

Uncharacterized protein. (470 aa)

Predicted Functional Partners:

ENSACLP00000005785

0.803

LOC113008802

0.803

LOC113021951

0.803

LOC113010138

0.723

itgb1

0.723

LOC113008411

0.723

LOC113013062

0.609

LOC113022290

0.609

csnk1a1

0.606

LOC113013061

0.584

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000005785	ENSACLP00000005819	ENSACLP00000005785	ENSACLP00000005819	PDZ domain-containing protein.	Uncharacterized protein.	0.803
ENSACLP00000005785	LOC113008411	ENSACLP00000005785	ENSACLP00000036151	PDZ domain-containing protein.	Integrin beta.	0.723
ENSACLP00000005785	LOC113008802	ENSACLP00000005785	ENSACLP00000016790	PDZ domain-containing protein.	Uncharacterized protein.	0.803
ENSACLP00000005785	LOC113010138	ENSACLP00000005785	ENSACLP00000002949	PDZ domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.723
ENSACLP00000005785	LOC113013061	ENSACLP00000005785	ENSACLP00000001885	PDZ domain-containing protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.584
ENSACLP00000005785	LOC113013062	ENSACLP00000005785	ENSACLP00000001808	PDZ domain-containing protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.609
ENSACLP00000005785	LOC113021951	ENSACLP00000005785	ENSACLP00000029399	PDZ domain-containing protein.	Uncharacterized protein.	0.803
ENSACLP00000005785	LOC113022290	ENSACLP00000005785	ENSACLP00000019915	PDZ domain-containing protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.609
ENSACLP00000005785	csnk1a1	ENSACLP00000005785	ENSACLP00000009965	PDZ domain-containing protein.	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	0.606
ENSACLP00000005785	itgb1	ENSACLP00000005785	ENSACLP00000016891	PDZ domain-containing protein.	Integrin beta; Belongs to the integrin beta chain family.	0.723
ENSACLP00000005819	ENSACLP00000005785	ENSACLP00000005819	ENSACLP00000005785	Uncharacterized protein.	PDZ domain-containing protein.	0.803
ENSACLP00000005819	LOC113008411	ENSACLP00000005819	ENSACLP00000036151	Uncharacterized protein.	Integrin beta.	0.723
ENSACLP00000005819	LOC113008802	ENSACLP00000005819	ENSACLP00000016790	Uncharacterized protein.	Uncharacterized protein.	0.803
ENSACLP00000005819	LOC113010138	ENSACLP00000005819	ENSACLP00000002949	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.723
ENSACLP00000005819	LOC113013061	ENSACLP00000005819	ENSACLP00000001885	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 3.	0.584
ENSACLP00000005819	LOC113013062	ENSACLP00000005819	ENSACLP00000001808	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 2.	0.609
ENSACLP00000005819	LOC113021951	ENSACLP00000005819	ENSACLP00000029399	Uncharacterized protein.	Uncharacterized protein.	0.803
ENSACLP00000005819	LOC113022290	ENSACLP00000005819	ENSACLP00000019915	Uncharacterized protein.	Guanine nucleotide binding protein (G protein), alpha transducing activity polypeptide 1.	0.609
ENSACLP00000005819	csnk1a1	ENSACLP00000005819	ENSACLP00000009965	Uncharacterized protein.	Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.	0.606
ENSACLP00000005819	itgb1	ENSACLP00000005819	ENSACLP00000016891	Uncharacterized protein.	Integrin beta; Belongs to the integrin beta chain family.	0.723