Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005838RNA binding motif protein 17. (397 aa)    
Predicted Functional Partners:
ENSACLP00000000023
Small nuclear ribonucleoprotein polypeptide A.
   
 0.999
cherp
Calcium homeostasis endoplasmic reticulum protein.
   
 0.999
sf3a2
Splicing factor 3a, subunit 2.
    
 0.997
sf3a3
Splicing factor 3a, subunit 3.
   
 0.996
sf3b1
Splicing factor 3b, subunit 1.
   
 0.996
sf3a1
Splicing factor 3a, subunit 1.
   
 0.995
SUGP1
SURP and G-patch domain containing 1.
   
 
 0.991
sf3b2
Splicing factor 3b, subunit 2.
   
 0.991
LOC113031008
Zgc:163098.
   
 0.986
ENSACLP00000040888
U2 snRNP-associated SURP domain containing.
   
 0.986
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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