STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
abcf2ATP-binding cassette, sub-family F (GCN20), member 2b. (612 aa)    
Predicted Functional Partners:
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.951
ENSACLP00000008177
Eukaryotic translation initiation factor 5B.
  
 
 0.927
ENSACLP00000032040
Mitochondrial ribosomal protein L20; Belongs to the bacterial ribosomal protein bL20 family.
  
 
 0.924
mrpl27
Mitochondrial ribosomal protein L27.
  
 
 0.909
rpl11
Ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.
  
 
 0.901
ENSACLP00000016157
Ribosomal protein S18; Belongs to the universal ribosomal protein uS13 family.
  
 
 0.900
ENSACLP00000024469
Uncharacterized protein.
  
   0.900
ENSACLP00000038298
Mitochondrial ribosomal protein L33.
  
 
 0.899
rpl23
Ribosomal protein L23; Belongs to the universal ribosomal protein uL14 family.
  
 
 0.889
ENSACLP00000020299
Ribosomal protein S3; Belongs to the universal ribosomal protein uS3 family.
  
 
 0.889
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.