Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
abcf2ATP-binding cassette, sub-family F (GCN20), member 2b. (612 aa)    
Predicted Functional Partners:
abce1
ATP-binding cassette, sub-family E (OABP), member 1.
   
 
 0.972
ENSACLP00000008177
Eukaryotic translation initiation factor 5B.
  
 
 0.937
pa2g4
Proliferation-associated 2G4, b.
  
 
 0.882
eef1g
Eukaryotic translation elongation factor 1 gamma.
   
 
 0.863
gnl1
Guanine nucleotide binding protein-like 1.
  
 
 0.850
ENSACLP00000000746
Large 60S subunit nuclear export GTPase 1.
  
 
 0.839
ENSACLP00000036883
NOP58 ribonucleoprotein homolog (yeast).
   
 
 0.828
wdr36
WD repeat domain 36.
   
   0.827
rpl10a
Ribosomal protein; Belongs to the universal ribosomal protein uL1 family.
   
 
 0.824
ENSACLP00000003442
FA complementation group E.
   
 
 0.824
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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