Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
LOC113022629Innate immunity activator b. (615 aa)    
Predicted Functional Partners:
sav1
Salvador family WW domain containing protein 1.
    
 0.751
sgf29
SAGA complex associated factor 29.
    
   0.734
tax1bp3
Tax1 (human T-cell leukemia virus type I) binding protein 3.
    
   0.725
LOC113018559
CAP-Gly domain-containing protein.
    
  0.657
ENSACLP00000040036
Dynactin 1b.
    
  0.657
dctn5
Dynactin 5.
    
   0.626
CYTH3
Cytohesin 3.
    
 
 0.616
ENSACLP00000028456
PH domain-containing protein.
    
 
 0.616
CYTH2
Cytohesin 2.
    
 
 0.616
LOC113020693
Cytohesin 1a.
    
 
 0.616
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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