Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000005893SCD domain-containing protein. (1191 aa)    
Predicted Functional Partners:
rad21
RAD21 cohesin complex component a.
   
 0.993
smc1a
Structural maintenance of chromosomes protein.
   
 0.991
LOC113026355
Structural maintenance of chromosomes protein.
   
 0.991
smc3
Structural maintenance of chromosomes protein.
   
 0.986
LOC113029849
REC8 meiotic recombination protein b.
   
 0.955
espl1
Extra spindle pole bodies like 1, separase.
   
 0.926
pds5b
PDS5 cohesin associated factor B.
   
 0.913
pds5a
PDS5 cohesin associated factor A.
   
 0.913
ENSACLP00000020708
Nipped-B protein.
   
 0.884
ENSACLP00000028272
Nipped-B protein.
   
 0.884
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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