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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
alkbh7AlkB homolog 7. (230 aa)    
Predicted Functional Partners:
ndufb7
NADH:ubiquinone oxidoreductase subunit B7.
   
    0.793
NDUFA13
NADH:ubiquinone oxidoreductase subunit A13.
   
  
 0.749
fto
FTO alpha-ketoglutarate dependent dioxygenase.
     
 0.743
ssx2ip
Synovial sarcoma, X breakpoint 2 interacting protein b.
 
   
  0.681
LOC113010680
Synovial sarcoma, X breakpoint 2 interacting protein a.
 
   
  0.681
ENSACLP00000002672
AlkB homolog 6.
   
  
 0.613
LOC113024704
Uncharacterized protein.
   
    0.611
NDUFS8
NADH:ubiquinone oxidoreductase core subunit S8.
   
    0.611
alkbh4
AlkB homolog 4, lysine demthylase.
   
  
 0.602
ENSACLP00000001671
Afadin, adherens junction formation factor a.
    
  0.574
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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