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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tmem17Transmembrane protein 17. (184 aa)    
Predicted Functional Partners:
b9d1
B9 protein domain 1.
    
 
 0.597
tmem231
Transmembrane protein 231.
    
 
 0.575
ENSACLP00000026187
Coiled-coil and C2 domain containing 2A.
    
 
 0.561
LOC113032048
Transmembrane protein 216.
   
  
 0.552
ENSACLP00000026348
Uncharacterized protein.
    
 
 0.520
tctn1
DUF1619 domain-containing protein.
      
 0.517
nphp1
Nephronophthisis 1.
      
 0.487
ENSACLP00000011309
Transmembrane protein 67.
      
 0.485
ENSACLP00000023574
Tubulin tyrosine ligase-like family, member 10.
      
 0.463
drc7
Uncharacterized protein.
      
 0.437
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.