STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
rab27aRAB27A, member RAS oncogene family. (220 aa)    
Predicted Functional Partners:
mlph
Melanophilin b.
    
 
 0.788
LOC113007113
Melanophilin a.
    
 
 0.788
ENSACLP00000017764
MAP-kinase activating death domain.
     
 0.744
LOC113029983
Rab proteins geranylgeranyltransferase component A; Substrate-binding subunit (component A) of the Rab geranylgeranyltransferase (GGTase) complex. Binds unprenylated Rab proteins and presents the substrate peptide to the catalytic component B. The component A is thought to be regenerated by transferring its prenylated Rab back to the donor membrane.
    
 0.729
ENSACLP00000003376
Uncharacterized protein.
    
 0.729
cd63
Tetraspanin.
     
 0.725
rabggta
Rab geranylgeranyltransferase subunit alpha.
     
 0.679
ENSACLP00000013917
Synaptotagmin-like 2b.
    
 
 0.657
sytl1
Uncharacterized protein.
    
 
 0.657
ENSACLP00000036903
Uncharacterized protein.
    
 
 0.657
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.