STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113031089Beta 3-glucosyltransferase b. (475 aa)    
Predicted Functional Partners:
ENSACLP00000000670
Beta 3-glucosyltransferase a.
  
  
 
0.850
nelfb
Negative elongation factor complex member B.
    
 0.842
polr2h
Info polymerase (RNA) II (DNA directed) polypeptide H.
    
  0.791
polr2b
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
  0.755
polr2i
DNA-directed RNA polymerase subunit; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. Belongs to the archaeal rpoM/eukaryotic RPA12/RPB9/RPC11 RNA polymerase family.
    
  0.750
polr2c
Polymerase (RNA) II (DNA directed) polypeptide C.
    
  0.750
polr2f
Polymerase (RNA) II (DNA directed) polypeptide F.
    
 0.750
POLR2E
RNA polymerase II subunit E.
    
  0.743
ENSACLP00000021736
Uncharacterized protein.
    
  0.743
ENSACLP00000016700
Transcription elongation factor SPT5.
    
 0.733
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.