sema4c protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

sema4c

Uncharacterized protein; Belongs to the semaphorin family. (868 aa)

Predicted Functional Partners:

nrp1

0.749

met

0.741

LOC113022284

0.741

mst1r

0.741

LOC113013095

0.676

ENSACLP00000020066

0.676

ENSACLP00000020875

0.676

ENSACLP00000039184

0.676

ENSACLP00000039374

0.676

LOC113026494

0.676

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000020066	LOC113022284	ENSACLP00000020066	ENSACLP00000019676	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.654
ENSACLP00000020066	met	ENSACLP00000020066	ENSACLP00000018459	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.654
ENSACLP00000020066	mst1r	ENSACLP00000020066	ENSACLP00000031901	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.654
ENSACLP00000020066	nrp1	ENSACLP00000020066	ENSACLP00000016960	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.784
ENSACLP00000020066	sema4c	ENSACLP00000020066	ENSACLP00000005992	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.676
ENSACLP00000020875	LOC113022284	ENSACLP00000020875	ENSACLP00000019676	Plexin B3.	Macrophage stimulating 1 receptor a.	0.654
ENSACLP00000020875	met	ENSACLP00000020875	ENSACLP00000018459	Plexin B3.	MET proto-oncogene, receptor tyrosine kinase.	0.661
ENSACLP00000020875	mst1r	ENSACLP00000020875	ENSACLP00000031901	Plexin B3.	Macrophage stimulating 1 receptor b.	0.654
ENSACLP00000020875	nrp1	ENSACLP00000020875	ENSACLP00000016960	Plexin B3.	Neuropilin; Belongs to the neuropilin family.	0.784
ENSACLP00000020875	sema4c	ENSACLP00000020875	ENSACLP00000005992	Plexin B3.	Uncharacterized protein; Belongs to the semaphorin family.	0.676
ENSACLP00000039184	LOC113022284	ENSACLP00000039184	ENSACLP00000019676	Plexin b1b.	Macrophage stimulating 1 receptor a.	0.654
ENSACLP00000039184	met	ENSACLP00000039184	ENSACLP00000018459	Plexin b1b.	MET proto-oncogene, receptor tyrosine kinase.	0.661
ENSACLP00000039184	mst1r	ENSACLP00000039184	ENSACLP00000031901	Plexin b1b.	Macrophage stimulating 1 receptor b.	0.654
ENSACLP00000039184	nrp1	ENSACLP00000039184	ENSACLP00000016960	Plexin b1b.	Neuropilin; Belongs to the neuropilin family.	0.784
ENSACLP00000039184	sema4c	ENSACLP00000039184	ENSACLP00000005992	Plexin b1b.	Uncharacterized protein; Belongs to the semaphorin family.	0.676
ENSACLP00000039374	LOC113022284	ENSACLP00000039374	ENSACLP00000019676	Sema domain-containing protein.	Macrophage stimulating 1 receptor a.	0.654
ENSACLP00000039374	met	ENSACLP00000039374	ENSACLP00000018459	Sema domain-containing protein.	MET proto-oncogene, receptor tyrosine kinase.	0.654
ENSACLP00000039374	mst1r	ENSACLP00000039374	ENSACLP00000031901	Sema domain-containing protein.	Macrophage stimulating 1 receptor b.	0.654
ENSACLP00000039374	nrp1	ENSACLP00000039374	ENSACLP00000016960	Sema domain-containing protein.	Neuropilin; Belongs to the neuropilin family.	0.784
ENSACLP00000039374	sema4c	ENSACLP00000039374	ENSACLP00000005992	Sema domain-containing protein.	Uncharacterized protein; Belongs to the semaphorin family.	0.676