creg1 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

creg1

Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family. (205 aa)

Predicted Functional Partners:

ENSACLP00000010626

0.673

cited2

0.673

LOC113035690

0.618

ndufs2

0.616

LOC113014662

0.606

LOC113019278

0.605

sms

0.604

rcan1

0.602

rcan3

0.602

mpzl2

0.588

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc.

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000010626	LOC113014662	ENSACLP00000010626	ENSACLP00000033210	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Mab-21 domain-containing protein.	0.480
ENSACLP00000010626	LOC113019278	ENSACLP00000010626	ENSACLP00000009231	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Interferon regulatory factor 3.	0.634
ENSACLP00000010626	creg1	ENSACLP00000010626	ENSACLP00000005994	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family.	0.673
ENSACLP00000010626	rcan1	ENSACLP00000010626	ENSACLP00000014682	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Regulator of calcineurin 1a.	0.499
ENSACLP00000010626	rcan3	ENSACLP00000010626	ENSACLP00000023397	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Regulator of calcineurin 3.	0.499
ENSACLP00000010626	sms	ENSACLP00000010626	ENSACLP00000028132	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	Spermine synthase.	0.477
LOC113014662	ENSACLP00000010626	ENSACLP00000033210	ENSACLP00000010626	Mab-21 domain-containing protein.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	0.480
LOC113014662	LOC113019278	ENSACLP00000033210	ENSACLP00000009231	Mab-21 domain-containing protein.	Interferon regulatory factor 3.	0.895
LOC113014662	cited2	ENSACLP00000033210	ENSACLP00000041165	Mab-21 domain-containing protein.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b.	0.480
LOC113014662	creg1	ENSACLP00000033210	ENSACLP00000005994	Mab-21 domain-containing protein.	Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family.	0.606
LOC113014662	rcan1	ENSACLP00000033210	ENSACLP00000014682	Mab-21 domain-containing protein.	Regulator of calcineurin 1a.	0.500
LOC113014662	rcan3	ENSACLP00000033210	ENSACLP00000023397	Mab-21 domain-containing protein.	Regulator of calcineurin 3.	0.500
LOC113014662	sms	ENSACLP00000033210	ENSACLP00000028132	Mab-21 domain-containing protein.	Spermine synthase.	0.509
LOC113019278	ENSACLP00000010626	ENSACLP00000009231	ENSACLP00000010626	Interferon regulatory factor 3.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4a.	0.634
LOC113019278	LOC113014662	ENSACLP00000009231	ENSACLP00000033210	Interferon regulatory factor 3.	Mab-21 domain-containing protein.	0.895
LOC113019278	cited2	ENSACLP00000009231	ENSACLP00000041165	Interferon regulatory factor 3.	Cbp/p300-interacting transactivator, with Glu/Asp-rich carboxy-terminal domain, 4b.	0.634
LOC113019278	creg1	ENSACLP00000009231	ENSACLP00000005994	Interferon regulatory factor 3.	Cellular repressor of E1A-stimulated genes 1; Belongs to the CREG family.	0.605
LOC113019278	rcan1	ENSACLP00000009231	ENSACLP00000014682	Interferon regulatory factor 3.	Regulator of calcineurin 1a.	0.480
LOC113019278	rcan3	ENSACLP00000009231	ENSACLP00000023397	Interferon regulatory factor 3.	Regulator of calcineurin 3.	0.480
LOC113019278	sms	ENSACLP00000009231	ENSACLP00000028132	Interferon regulatory factor 3.	Spermine synthase.	0.521