STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027080CCR4-NOT transcription complex, subunit 2. (522 aa)    
Predicted Functional Partners:
ENSACLP00000021173
CCR4-NOT transcription complex, subunit 1.
   
 0.989
CNOT9
CCR4-NOT transcription complex subunit 9.
    
 0.988
cnot4
CCR4-NOT transcription complex, subunit 4a.
    
 0.984
LOC113015167
CCR4-NOT transcription complex, subunit 3b.
    
0.976
cnot3
CCR4-NOT transcription complex, subunit 3a.
    
0.976
cnot7
CCR4-NOT transcription complex, subunit 7.
   
 0.976
cnot8
CCR4-NOT transcription complex, subunit 8.
   
 0.976
cnot10
CCR4-NOT transcription complex, subunit 10.
   
 0.969
ENSACLP00000022178
CCR4-NOT transcription complex, subunit 11.
    
 0.967
cnot6l
CCR4-NOT transcription complex, subunit 6-like.
    
 0.910
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.