Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006014Collagen, type V, alpha 3b. (1657 aa)    
Predicted Functional Partners:
ENSACLP00000000620
Fibrillar collagen NC1 domain-containing protein.
     
 0.671
ENSACLP00000004271
Procollagen, type IX, alpha 2.
     
 0.671
ENSACLP00000016307
Collagen, type V, alpha 2b.
     
  0.669
ENSACLP00000035735
Collagen, type I, alpha 2.
     
  0.669
ENSACLP00000040879
Uncharacterized protein.
     
  0.669
ENSACLP00000026996
VWFA domain-containing protein.
   
 0.647
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.636
LOC113010710
Collagen, type VI, alpha 2.
  
0.582
ENSACLP00000009450
Collagen, type I, alpha 1a.
     
  0.563
ENSACLP00000039222
Collagen, type I, alpha 1b.
     
  0.563
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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