STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006029Obscurin-like 1b. (2827 aa)    
Predicted Functional Partners:
wdr18
WD repeat domain 18.
   
 0.717
ENSACLP00000011126
Testis expressed 10.
   
 0.673
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.651
LOC113008191
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.651
ENSACLP00000025749
Uncharacterized protein.
 
     
0.634
LOC113019349
Myosin light chain, phosphorylatable, fast skeletal muscle b.
   
 0.627
ENSACLP00000024801
Ig-like domain-containing protein.
   
  0.627
LOC113020329
Myosin light chain, phosphorylatable, fast skeletal muscle a.
   
 0.627
CALML6
Calmodulin like 6.
    
 0.617
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.609
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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