Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006029Obscurin-like 1b. (2827 aa)    
Predicted Functional Partners:
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.646
wdr18
WD repeat domain 18.
   
 0.645
ENSACLP00000025749
Uncharacterized protein.
 
     
0.634
ENSACLP00000010675
Uncharacterized protein.
   
  0.631
ENSACLP00000011126
Testis expressed 10.
   
 0.604
LOC113008191
Myosin, light chain 1, alkali; skeletal, fast.
   
 0.591
LOC113034175
Myosin, light chain 2b, regulatory, cardiac, slow.
   
 0.581
MYL2
Myosin light chain 2.
   
 0.581
ENSACLP00000022145
Uncharacterized protein.
    
 0.581
ENSACLP00000038177
Myosin binding protein C, cardiac.
     
  0.571
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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