LOC113029374 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

LOC113029374

Uncharacterized protein. (1293 aa)

Predicted Functional Partners:

KCNE2

0.663

ENSACLP00000017121

0.580

LOC113036155

0.571

rabgef1

0.571

LOC113033890

0.571

KCNJ15

0.528

LOC113010167

0.527

KCNAB1

0.527

LOC113013133

0.527

ENSACLP00000012057

0.527

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000012057	LOC113029374	ENSACLP00000012057	ENSACLP00000006035	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.527
ENSACLP00000017121	LOC113029374	ENSACLP00000017121	ENSACLP00000006035	Uncharacterized protein.	Uncharacterized protein.	0.580
KCNAB1	LOC113029374	ENSACLP00000004799	ENSACLP00000006035	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	Uncharacterized protein.	0.527
KCNE2	LOC113029374	ENSACLP00000007918	ENSACLP00000006035	Potassium voltage-gated channel subfamily E regulatory subunit 2.	Uncharacterized protein.	0.663
KCNJ15	LOC113029374	ENSACLP00000024072	ENSACLP00000006035	Potassium voltage-gated channel subfamily J member 15.	Uncharacterized protein.	0.528
LOC113010167	LOC113029374	ENSACLP00000000323	ENSACLP00000006035	Potassium voltage-gated channel, shaker-related subfamily, beta member 1 b.	Uncharacterized protein.	0.527
LOC113013133	LOC113029374	ENSACLP00000007138	ENSACLP00000006035	Aldo_ket_red domain-containing protein.	Uncharacterized protein.	0.527
LOC113029374	ENSACLP00000012057	ENSACLP00000006035	ENSACLP00000012057	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.527
LOC113029374	ENSACLP00000017121	ENSACLP00000006035	ENSACLP00000017121	Uncharacterized protein.	Uncharacterized protein.	0.580
LOC113029374	KCNAB1	ENSACLP00000006035	ENSACLP00000004799	Uncharacterized protein.	Potassium voltage-gated channel subfamily A member regulatory beta subunit 1.	0.527
LOC113029374	KCNE2	ENSACLP00000006035	ENSACLP00000007918	Uncharacterized protein.	Potassium voltage-gated channel subfamily E regulatory subunit 2.	0.663
LOC113029374	KCNJ15	ENSACLP00000006035	ENSACLP00000024072	Uncharacterized protein.	Potassium voltage-gated channel subfamily J member 15.	0.528
LOC113029374	LOC113010167	ENSACLP00000006035	ENSACLP00000000323	Uncharacterized protein.	Potassium voltage-gated channel, shaker-related subfamily, beta member 1 b.	0.527
LOC113029374	LOC113013133	ENSACLP00000006035	ENSACLP00000007138	Uncharacterized protein.	Aldo_ket_red domain-containing protein.	0.527
LOC113029374	LOC113033890	ENSACLP00000006035	ENSACLP00000034418	Uncharacterized protein.	Uncharacterized protein.	0.571
LOC113029374	LOC113036155	ENSACLP00000006035	ENSACLP00000023101	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.571
LOC113029374	rabgef1	ENSACLP00000006035	ENSACLP00000023746	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.571
LOC113033890	LOC113029374	ENSACLP00000034418	ENSACLP00000006035	Uncharacterized protein.	Uncharacterized protein.	0.571
LOC113033890	LOC113036155	ENSACLP00000034418	ENSACLP00000023101	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1, like.	0.881
LOC113033890	rabgef1	ENSACLP00000034418	ENSACLP00000023746	Uncharacterized protein.	RAB guanine nucleotide exchange factor (GEF) 1.	0.881