STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpc2Glypican 2; Cell surface proteoglycan that bears heparan sulfate. Belongs to the glypican family. (586 aa)    
Predicted Functional Partners:
LOC113021803
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
     
 0.823
fzd4
Frizzled class receptor 4; Belongs to the G-protein coupled receptor Fz/Smo family.
     
 0.805
LOC113031828
Syndecan; Cell surface proteoglycan; Belongs to the syndecan proteoglycan family.
    
 0.740
LOC113034822
Heparin-binding EGF-like growth factor a.
    
 0.682
dhh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.648
ENSACLP00000018004
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.648
LOC113008427
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.648
shh
Hedgehog protein; Intercellular signal essential for a variety of patterning events during development.
    
 0.648
b4galt7
Xylosylprotein beta 1,4-galactosyltransferase, polypeptide 7 (galactosyltransferase I).
     
 0.633
ext2
Exostosin glycosyltransferase 2; Belongs to the glycosyltransferase 47 family.
     
 0.633
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.