STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SYNDIG1Synapse differentiation inducing 1. (282 aa)    
Predicted Functional Partners:
ENSACLP00000031832
Trafficking regulator of GLUT4 (SLC2A4) 1a.
      
 0.687
CNIH2
Cornichon family AMPA receptor auxiliary protein 2.
      
 0.650
cnih3
Cornichon family AMPA receptor auxiliary protein 3.
      
 0.650
nell2
Neural EGFL like 2a.
   
  
 0.617
LOC113030095
Rap guanine nucleotide exchange factor (GEF) 6.
      
 0.601
NRXN2
Neurexin 2.
      
 0.596
LOC113030315
Myelin protein zero-like 1 like.
      
 0.567
ENSACLP00000007965
Uncharacterized protein.
      
 0.559
ENSACLP00000012517
Uncharacterized protein.
      
 0.559
ENSACLP00000014551
Proline-rich transmembrane protein 2.
   
  
 0.536
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.