Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
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Co-occurrence
Co-expression
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[Homology]
Score
LOC113028302H6 family homeobox 3. (290 aa)    
Predicted Functional Partners:
ENSACLP00000030473
Regulatory factor X, 1b (influences HLA class II expression).
      
 0.608
ENSACLP00000021238
ISY1 splicing factor homolog.
    
   0.605
LOC113012525
Notochord homeobox.
    
   0.530
LOC113036802
Zgc:112083.
    
   0.527
hinfp
Histone H4 transcription factor.
    
   0.527
LOC113011687
Dystrobrevin.
    
   0.483
dtna
Dystrobrevin.
    
   0.483
ENSACLP00000040635
Dystrobrevin.
    
   0.483
tbx1
T-box transcription factor 1.
    
 
 0.480
ENSACLP00000016359
Uncharacterized protein.
    
 
 0.480
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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