STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tbx1T-box transcription factor 1. (518 aa)    
Predicted Functional Partners:
ENSACLP00000040660
Uncharacterized protein.
   
  
 0.688
rchy1
Ring finger and CHY zinc finger domain containing 1.
   
    0.675
nkx2-5
NK2 homeobox 5.
    
 
 0.525
LOC113008915
Prickle homolog 1b.
      
 0.489
prickle2
Prickle homolog 2b.
      
 0.489
LOC113028302
H6 family homeobox 3.
    
 
 0.487
LOC113023210
H6 family homeobox 4.
    
 
 0.487
LOC113035307
H6 family homeobox 3a.
    
 
 0.487
PRICKLE1
Prickle homolog 1a.
      
 0.481
VANGL1
Vang-like protein.
      
 0.431
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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