Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
tbx1T-box transcription factor 1. (518 aa)    
Predicted Functional Partners:
LOC113008915
Prickle homolog 1b.
      
 0.706
prickle2
Prickle homolog 2b.
      
 0.704
PRICKLE1
Prickle homolog 1a.
      
 0.693
ISL2
ISL LIM homeobox 2b.
    
 0.661
LOC113033175
ISL LIM homeobox 1.
    
 0.661
LOC113027466
ISL LIM homeobox 2a.
    
 0.661
VANGL1
Vang-like protein.
      
 0.661
nkx2-5
NK2 homeobox 5.
    
 0.651
gnb1l
Guanine nucleotide binding protein (G protein), beta polypeptide 1-like.
      
 0.612
ENSACLP00000003757
Vang-like protein.
      
 0.601
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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