Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
LOC113007685CTD (carboxy-terminal domain, RNA polymerase II, polypeptide A) small phosphatase 1. (264 aa)    
Predicted Functional Partners:
mbp
Myelin basic protein b.
    
   0.743
cdca3
Si:ch211-69g19.2.
    
   0.743
ENSACLP00000005889
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.733
polr2g
Polymerase (RNA) II (DNA directed) polypeptide G-like.
    
 0.693
polr2d
Polymerase (RNA) II (DNA directed) polypeptide D.
    
 0.691
rest
RE1-silencing transcription factor.
    
 
 0.690
polr2j
Polymerase (RNA) II (DNA directed) polypeptide J.
    
 0.677
POLR2E
RNA polymerase II subunit E.
   
  0.671
LPIN2
Lipin 2.
    
 0.667
lpin1
Si:ch73-21k16.1.
    
 0.667
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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