STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
tnfsf13bTNF superfamily member 13b; Belongs to the tumor necrosis factor family. (261 aa)    
Predicted Functional Partners:
tnfrsf13b
TACI-CRD2 domain-containing protein.
    
 0.981
ENSACLP00000013436
TNF superfamily member 12; Belongs to the tumor necrosis factor family.
   
 0.857
ENSACLP00000000379
TNF_2 domain-containing protein; Belongs to the tumor necrosis factor family.
   
 
 0.829
LOC113008307
TNF superfamily member 11; Belongs to the tumor necrosis factor family.
   
 0.829
LOC113013369
CD40 molecule, TNF receptor superfamily member 5.
     
 0.782
LOC113024716
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.754
traf3
TNF receptor-associated factor; Belongs to the TNF receptor-associated factor family.
   
 0.754
aktip
Akt interacting protein.
    
   0.741
LOC113031642
Tumor necrosis factor b (TNF superfamily, member 2).
   
 
 0.737
tnfrsf11a
Tumor necrosis factor receptor superfamily, member 11a, NFKB activator.
     
 0.700
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.