STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113017703B30.2/SPRY domain-containing protein. (714 aa)    
Predicted Functional Partners:
sel1l
SEL1L adaptor subunit of ERAD E3 ubiquitin ligase.
     
  0.695
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.646
LOC113014246
Teashirt zinc finger homeobox 1.
      
 0.556
TSHZ1
Teashirt zinc finger homeobox 1.
      
 0.556
ZADH2
Zinc binding alcohol dehydrogenase domain containing 2.
    
 
 0.549
ENSACLP00000032756
Zinc finger protein 407.
    
 
 0.527
ENSACLP00000032833
Uncharacterized protein.
    
 
 0.527
wdr18
WD repeat domain 18.
   
 0.468
ENSACLP00000011126
Testis expressed 10.
    
 0.457
PES1
Pescadillo homolog; Component of the PeBoW complex, which is required for maturation of 28S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
   
 0.444
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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