Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
pdzk1PDZ domain containing 1. (521 aa)    
Predicted Functional Partners:
ENSACLP00000019390
Uncharacterized protein.
    
 0.955
scarb1
Scavenger receptor class B, member 1; Belongs to the CD36 family.
   
 
 0.889
suox
Sulfite oxidase.
     
  0.870
cltrn
Si:dkey-194e6.1.
   
 
 0.798
ace2
Angiotensin-converting enzyme.
   
 
 0.798
LOC113029406
Solute carrier family 34 member 1a.
   
 0.772
LOC113024091
Solute carrier family 34 member 2a.
   
 0.772
LOC113016243
Solute carrier family 34 member 2b.
   
 0.772
ENSACLP00000012822
Uncharacterized protein.
   
 0.743
ENSACLP00000013007
ABC transmembrane type-1 domain-containing protein.
   
 0.743
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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