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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
gpatch8G patch domain containing 8. (1487 aa)    
Predicted Functional Partners:
ddx10
RNA helicase.
    
 0.807
nol6
Nucleolar protein 6.
    
 
 0.769
utp6
UTP6 small subunit processome component.
    
 
 0.765
bysl
Bystin-like.
    
 
 0.756
nom1
Nucleolar protein with MIF4G domain 1.
    
   0.755
nop14
NOP14 nucleolar protein homolog (yeast).
    
   0.755
imp3
IMP U3 small nucleolar ribonucleoprotein 3.
    
   0.755
utp3
UTP3 small subunit processome component.
    
   0.755
utp25
UTP25 small subunit processor component.
    
   0.755
ENSACLP00000000465
RNA helicase.
    
  0.742
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.