gpatch8 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

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query proteins and first shell of interactors

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second shell of interactors

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proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

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Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

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textmining

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co-expression

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gene neighborhood

gene co-occurrence

gene fusions

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[Homology]

Score

gpatch8

G patch domain containing 8. (1487 aa)

Predicted Functional Partners:

ENSACLP00000031765

0.857

LOC113020727

0.857

ENSACLP00000012500

0.854

LOC113031147

0.812

LOC113036098

0.812

psme2

0.778

lpxn

0.751

TGFB1I1

0.751

ENSACLP00000016066

0.751

LOC113033101

0.751

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

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structured XML interaction data, according to the 'PSI-MI' data standard

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MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

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a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

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a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000012500	LOC113031147	ENSACLP00000012500	ENSACLP00000010904	Fibronectin 1a.	Vitronectin b.	0.609
ENSACLP00000012500	LOC113036098	ENSACLP00000012500	ENSACLP00000031286	Fibronectin 1a.	Vitronectin a.	0.609
ENSACLP00000012500	gpatch8	ENSACLP00000012500	ENSACLP00000006178	Fibronectin 1a.	G patch domain containing 8.	0.854
ENSACLP00000016066	gpatch8	ENSACLP00000016066	ENSACLP00000006178	Uncharacterized protein.	G patch domain containing 8.	0.751
ENSACLP00000031765	LOC113020727	ENSACLP00000031765	ENSACLP00000038434	RRM domain-containing protein.	RNA binding protein S1, serine-rich domain.	0.549
ENSACLP00000031765	gpatch8	ENSACLP00000031765	ENSACLP00000006178	RRM domain-containing protein.	G patch domain containing 8.	0.857
LOC113020727	ENSACLP00000031765	ENSACLP00000038434	ENSACLP00000031765	RNA binding protein S1, serine-rich domain.	RRM domain-containing protein.	0.549
LOC113020727	gpatch8	ENSACLP00000038434	ENSACLP00000006178	RNA binding protein S1, serine-rich domain.	G patch domain containing 8.	0.857
LOC113031147	ENSACLP00000012500	ENSACLP00000010904	ENSACLP00000012500	Vitronectin b.	Fibronectin 1a.	0.609
LOC113031147	LOC113036098	ENSACLP00000010904	ENSACLP00000031286	Vitronectin b.	Vitronectin a.	0.877
LOC113031147	gpatch8	ENSACLP00000010904	ENSACLP00000006178	Vitronectin b.	G patch domain containing 8.	0.812
LOC113033101	gpatch8	ENSACLP00000030918	ENSACLP00000006178	Paxillin b.	G patch domain containing 8.	0.751
LOC113036098	ENSACLP00000012500	ENSACLP00000031286	ENSACLP00000012500	Vitronectin a.	Fibronectin 1a.	0.609
LOC113036098	LOC113031147	ENSACLP00000031286	ENSACLP00000010904	Vitronectin a.	Vitronectin b.	0.877
LOC113036098	gpatch8	ENSACLP00000031286	ENSACLP00000006178	Vitronectin a.	G patch domain containing 8.	0.812
TGFB1I1	gpatch8	ENSACLP00000015188	ENSACLP00000006178	Transforming growth factor beta-1-induced transcript 1 protein; Functions as a molecular adapter coordinating multiple protein-protein interactions at the focal adhesion complex and in the nucleus. Links various intracellular signaling modules to plasma membrane receptors and regulates the Wnt and TGFB signaling pathways.	G patch domain containing 8.	0.751
gpatch8	ENSACLP00000012500	ENSACLP00000006178	ENSACLP00000012500	G patch domain containing 8.	Fibronectin 1a.	0.854
gpatch8	ENSACLP00000016066	ENSACLP00000006178	ENSACLP00000016066	G patch domain containing 8.	Uncharacterized protein.	0.751
gpatch8	ENSACLP00000031765	ENSACLP00000006178	ENSACLP00000031765	G patch domain containing 8.	RRM domain-containing protein.	0.857
gpatch8	LOC113020727	ENSACLP00000006178	ENSACLP00000038434	G patch domain containing 8.	RNA binding protein S1, serine-rich domain.	0.857