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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113032764RNA binding motif protein 24b. (235 aa)    
Predicted Functional Partners:
LOC113021216
RRM domain-containing protein.
  
 
 0.772
LOC113031831
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
0.741
LOC113024088
RNA binding fox-1 homolog 2.
  
 
0.725
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.590
sf3b1
Splicing factor 3b, subunit 1.
     
 0.579
ENSACLP00000033349
Splicing factor 3b, subunit 3.
     
 0.572
LOC113012021
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.561
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
    
  0.558
sf3b4
Splicing factor 3b, subunit 4.
     
 0.553
LOC113016105
ELAV-like protein; Belongs to the RRM elav family.
  
 
 
 0.540
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.