Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113032764RNA binding motif protein 24b. (235 aa)    
Predicted Functional Partners:
LOC113021216
RRM domain-containing protein.
  
 
 0.756
LOC113031831
RNA binding protein fox-1 homolog; RNA-binding protein that regulates alternative splicing events.
  
 
0.713
LOC113024088
RNA binding fox-1 homolog 2.
   
 
 0.670
sf3b1
Splicing factor 3b, subunit 1.
     
 0.612
sf3b4
Splicing factor 3b, subunit 4.
     
 0.605
sf3b5
Splicing factor 3B subunit 5; Belongs to the SF3B5 family.
     
 0.601
ddx42
DEAD (Asp-Glu-Ala-Asp) box helicase 42.
    
  0.593
sf3b2
Splicing factor 3b, subunit 2.
     
  0.590
phf5a
PHD finger protein 5A.
     
  0.590
ENSACLP00000033349
Splicing factor 3b, subunit 3.
     
  0.590
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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