STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
bsxBrain-specific homeobox. (225 aa)    
Predicted Functional Partners:
drosha
Drosha ribonuclease III.
     
 0.875
dicer1
Dicer 1, ribonuclease type III; Belongs to the helicase family. Dicer subfamily.
     
 0.814
mff
Mitochondrial fission factor.
     
 0.807
mrpl44
Mitochondrial ribosomal protein L44.
     
 0.807
vax2
Ventral anterior homeobox 2.
   
 
0.728
LOC113012525
Notochord homeobox.
   
 
0.722
LOC113012624
Empty spiracles homeobox 1.
   
 
0.722
LOC113032022
Empty spiracles homeobox 3.
   
 
0.722
ENSACLP00000028809
Homeobox domain-containing protein.
   
  0.722
ENSACLP00000028932
Homeobox domain-containing protein.
   
 
0.722
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.