STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ergic1Endoplasmic reticulum-golgi intermediate compartment 1. (291 aa)    
Predicted Functional Partners:
gtpbp3
GTP binding protein 3, mitochondrial; Belongs to the TRAFAC class TrmE-Era-EngA-EngB-Septin-like GTPase superfamily. TrmE GTPase family.
  
 0.978
trmu
tRNA 5-methylaminomethyl-2-thiouridylate methyltransferase.
  
 0.847
ENSACLP00000008684
Immunoresponsive gene 1, like.
   
 
 0.645
ENSACLP00000039844
Aconitate decarboxylase 1.
   
 
 0.631
pipox
Pipecolic acid oxidase.
   
 
 0.622
ddo
Zgc:172341.
     
 0.621
ENSACLP00000038532
D-amino-acid oxidase, tandem duplicate 2.
     
 0.621
LOC113033676
Surfeit 4.
  
 
 0.573
surf4
Surfeit 4.
  
 
 0.573
oat
Ornithine aminotransferase; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
    
 0.555
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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