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STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113021340Casein kinase 1 delta; Belongs to the protein kinase superfamily. (404 aa)    
Predicted Functional Partners:
ltv1
LTV1 ribosome biogenesis factor.
    
 0.962
bysl
Bystin-like.
    
 0.926
riok2
RIO kinase 2 (yeast).
    
 0.919
csnk1a1
Casein kinase 1, alpha 1; Belongs to the protein kinase superfamily.
  
 
0.917
tsr1
TSR1 ribosome maturation factor.
    
 0.884
nob1
RNA-binding protein NOB1; May play a role in mRNA degradation. Belongs to the NOB1 family.
    
 0.871
ENSACLP00000009529
Period circadian clock 3.
    
 0.856
per1
Period circadian clock 1b.
    
 0.856
PER2
Period circadian regulator 2.
    
 0.856
LOC113009964
Period circadian clock 2.
    
 0.856
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.