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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
nod1Nucleotide-binding oligomerization domain containing 1. (941 aa)    
Predicted Functional Partners:
ripk2
Receptor-interacting serine-threonine kinase 2.
   
 0.969
sugt1
SGT1 homolog, MIS12 kinetochore complex assembly cochaperone.
    
 0.901
atg16l1
ATG16 autophagy related 16-like 1 (S. cerevisiae).
    
 0.897
ENSACLP00000015189
WD_REPEATS_REGION domain-containing protein.
    
 0.897
mavs
CARD_2 domain-containing protein.
    
 0.781
erbin
Erbb2 interacting protein.
    
 0.759
atg5
Autophagy protein 5; Involved in autophagic vesicle formation.
     
 0.700
RPS27A
Ribosomal protein S27a.
    
  0.697
atg12
Ubiquitin-like protein ATG12; Ubiquitin-like protein involved in autophagic vesicle formation; Belongs to the ATG12 family.
     
 0.687
uba52
Ubiquitin A-52 residue ribosomal protein fusion product 1.
    
  0.682
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.