STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006303Uncharacterized protein. (323 aa)    
Predicted Functional Partners:
ENSACLP00000017593
Polymerase (DNA directed), delta 2, regulatory subunit.
    
 0.727
ENSACLP00000010605
DNA polymerase.
   
 0.694
fancm
Uncharacterized protein.
    
 0.694
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
   
 0.636
snrpd2
Small nuclear ribonucleoprotein Sm D2.
    
 0.623
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
   
 0.610
mus81
MUS81 structure-specific endonuclease subunit.
    
 0.598
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
    
  0.596
snrpg
Small nuclear ribonucleoprotein G.
    
  0.577
LOC113007098
Uncharacterized protein.
    
 0.551
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
Server load: low (26%) [HD]