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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
neurl1bNeuralized E3 ubiquitin protein ligase 1B. (597 aa)    
Predicted Functional Partners:
mib2
Mindbomb E3 ubiquitin protein ligase 2.
   
 0.872
cand1
Cullin-associated and neddylation-dissociated 1.
     
 0.667
ENSACLP00000024519
TIP120 domain-containing protein.
     
 0.667
RPS27A
Ribosomal protein S27a.
    
  0.664
gsap
Gamma-secretase activating protein.
   
 
 0.631
ENSACLP00000015298
NBR1 autophagy cargo receptor b.
   
 
 0.631
sqstm1
Sequestosome 1.
   
 
 0.631
LOC113028111
NBR1 autophagy cargo receptor a.
   
 
 0.631
ENSACLP00000009605
Ubiquitin B.
    
 0.597
LOC113030103
Uncharacterized protein.
    
 0.597
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.