STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
lrrc73Leucine rich repeat containing 73. (330 aa)    
Predicted Functional Partners:
tbc1d5
TBC1 domain family, member 5.
    
   0.893
vps26a
VPS26, retromer complex component A.
    
 
 0.833
LOC113030809
Uncharacterized protein.
    
   0.813
vps26b
VPS26, retromer complex component B.
    
   0.813
ankrd13d
Ankyrin repeat domain 13 family, member D.
      
 0.802
vps35
Vacuolar protein sorting-associated protein 35; Plays a role in vesicular protein sorting.
    
   0.798
tepsin
TEPSIN adaptor related protein complex 4 accessory protein.
      
 0.781
VSIG10
Uncharacterized protein.
      
 0.736
nprl2
NPR2 like, GATOR1 complex subunit.
      
 0.725
polr3h
Polymerase (RNA) III (DNA directed) polypeptide H.
      
 0.720
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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