STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
crtamIg-like domain-containing protein. (444 aa)    
Predicted Functional Partners:
tbccd1
TBCC domain containing 1.
      
 0.781
gins1
GINS complex subunit 1 (Psf1 homolog).
      
 0.728
ENSACLP00000004610
Protein-S-isoprenylcysteine O-methyltransferase.
      
 0.722
bckdhb
Branched chain keto acid dehydrogenase E1 subunit beta.
      
 0.720
LOC113028923
Glucose-fructose oxidoreductase domain containing 1.
      
 0.716
LOC113023211
CCCTC-binding factor (zinc finger protein).
      
 0.655
ENSACLP00000023155
CCCTC-binding factor (zinc finger protein).
      
 0.655
sergef
Secretion regulating guanine nucleotide exchange factor.
      
 0.654
ENSACLP00000027547
Peptidylprolyl isomerase.
      
 0.641
pibf1
Progesterone immunomodulatory binding factor 1.
      
 0.615
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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