dlk2 protein (Astatotilapia calliptera) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Co-occurrence

Co-expression

Experiments

Databases

Textmining

[Homology]

Score

dlk2

Delta-like 2 homolog (Drosophila). (394 aa)

Predicted Functional Partners:

NUP62

0.688

ENSACLP00000033878

0.640

nkain2

0.621

nkain1

0.621

adpgk

0.597

mysm1

0.544

TTC28

0.526

ENSACLP00000036220

0.526

ENSACLP00000037094

0.520

frem1

0.493

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ENSACLP00000033878	ENSACLP00000036220	ENSACLP00000033878	ENSACLP00000036220	Kinectin 1.	TPR_REGION domain-containing protein.	0.624
ENSACLP00000033878	ENSACLP00000037094	ENSACLP00000033878	ENSACLP00000037094	Kinectin 1.	Im:7152348.	0.494
ENSACLP00000033878	TTC28	ENSACLP00000033878	ENSACLP00000015157	Kinectin 1.	Tetratricopeptide repeat domain 28.	0.624
ENSACLP00000033878	dlk2	ENSACLP00000033878	ENSACLP00000006352	Kinectin 1.	Delta-like 2 homolog (Drosophila).	0.640
ENSACLP00000036220	ENSACLP00000033878	ENSACLP00000036220	ENSACLP00000033878	TPR_REGION domain-containing protein.	Kinectin 1.	0.624
ENSACLP00000036220	dlk2	ENSACLP00000036220	ENSACLP00000006352	TPR_REGION domain-containing protein.	Delta-like 2 homolog (Drosophila).	0.526
ENSACLP00000036220	mysm1	ENSACLP00000036220	ENSACLP00000019550	TPR_REGION domain-containing protein.	Myb-like, SWIRM and MPN domains 1.	0.547
ENSACLP00000037094	ENSACLP00000033878	ENSACLP00000037094	ENSACLP00000033878	Im:7152348.	Kinectin 1.	0.494
ENSACLP00000037094	dlk2	ENSACLP00000037094	ENSACLP00000006352	Im:7152348.	Delta-like 2 homolog (Drosophila).	0.520
ENSACLP00000037094	mysm1	ENSACLP00000037094	ENSACLP00000019550	Im:7152348.	Myb-like, SWIRM and MPN domains 1.	0.711
NUP62	dlk2	ENSACLP00000014284	ENSACLP00000006352	Nucleoporin 62.	Delta-like 2 homolog (Drosophila).	0.688
TTC28	ENSACLP00000033878	ENSACLP00000015157	ENSACLP00000033878	Tetratricopeptide repeat domain 28.	Kinectin 1.	0.624
TTC28	dlk2	ENSACLP00000015157	ENSACLP00000006352	Tetratricopeptide repeat domain 28.	Delta-like 2 homolog (Drosophila).	0.526
TTC28	mysm1	ENSACLP00000015157	ENSACLP00000019550	Tetratricopeptide repeat domain 28.	Myb-like, SWIRM and MPN domains 1.	0.547
adpgk	dlk2	ENSACLP00000036009	ENSACLP00000006352	ADP-dependent glucokinase.	Delta-like 2 homolog (Drosophila).	0.597
dlk2	ENSACLP00000033878	ENSACLP00000006352	ENSACLP00000033878	Delta-like 2 homolog (Drosophila).	Kinectin 1.	0.640
dlk2	ENSACLP00000036220	ENSACLP00000006352	ENSACLP00000036220	Delta-like 2 homolog (Drosophila).	TPR_REGION domain-containing protein.	0.526
dlk2	ENSACLP00000037094	ENSACLP00000006352	ENSACLP00000037094	Delta-like 2 homolog (Drosophila).	Im:7152348.	0.520
dlk2	NUP62	ENSACLP00000006352	ENSACLP00000014284	Delta-like 2 homolog (Drosophila).	Nucleoporin 62.	0.688
dlk2	TTC28	ENSACLP00000006352	ENSACLP00000015157	Delta-like 2 homolog (Drosophila).	Tetratricopeptide repeat domain 28.	0.526