STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
phf8PHD finger protein 8. (1023 aa)    
Predicted Functional Partners:
skp1
S-phase kinase-associated protein 1; Belongs to the SKP1 family.
    
 0.833
suv39h1
Histone-lysine N-methyltransferase; Belongs to the class V-like SAM-binding methyltransferase superfamily. Histone-lysine methyltransferase family. Suvar3-9 subfamily.
    
 0.702
ENSACLP00000007188
DNA topoisomerase II binding protein 1.
    
   0.637
H2AZ1
Histone H2A; Belongs to the histone H2A family.
    
  0.607
LOC113033615
Histone H2A; Belongs to the histone H2A family.
    
  0.607
RING1
Ring finger protein 1.
    
 
 0.571
ENSACLP00000033001
Ring finger protein 2.
    
 
 0.571
ENSACLP00000009352
SMC5-SMC6 complex localization factor 1.
    
   0.561
ENSACLP00000034461
Uncharacterized protein.
     
 0.558
ENSACLP00000034490
ARID domain-containing protein.
     
 0.558
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.