Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
ctdnep1CTD nuclear envelope phosphatase 1b. (245 aa)    
Predicted Functional Partners:
cnep1r1
CTD nuclear envelope phosphatase 1 regulatory subunit 1.
   
 0.991
LPIN2
Lipin 2.
    
 0.932
lpin1
Si:ch73-21k16.1.
    
 0.932
LOC113022730
Zgc:123305.
    
 0.932
LOC113024476
Lipin 1.
    
 0.932
LOC113010431
Lipin 2.
    
 0.932
mal2
Mal, T cell differentiation protein 2 (gene/pseudogene).
      
 0.738
kbtbd4
Kelch repeat and BTB (POZ) domain containing 4.
      
 0.734
ENSACLP00000005889
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.733
LOC113029058
Solute carrier family 35 member G2b.
      
 0.711
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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