STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
hormad1One cut domain family member. (451 aa)    
Predicted Functional Partners:
orc3
Origin recognition complex, subunit 3.
    
 
 0.745
ENSACLP00000022686
Recombination signal binding protein for immunoglobulin kappa J region-like.
   
 
 0.510
rbpj
Recombination signal binding protein for immunoglobulin kappa J region.
   
 
  0.480
ENSACLP00000017664
Recombination signal binding protein for immunoglobulin kappa J region a.
   
 
  0.480
LOC113035572
Neurogenin 3.
   
 
 0.416
LOC113026082
Cyclin G2; Belongs to the cyclin family.
    
 
 0.410
CCNG2
Cyclin G2; Belongs to the cyclin family.
    
 
 0.410
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.