Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
LOC113027493Mitochondrial transcription termination factor 2. (375 aa)    
Predicted Functional Partners:
fastkd2
FAST kinase domains 2.
   
 0.870
ykt6
YKT6 v-SNARE homolog (S. cerevisiae); Belongs to the synaptobrevin family.
     
 0.723
stx5
Syntaxin 5A; Belongs to the syntaxin family.
     
  0.721
trub2
TruB pseudouridine (psi) synthase family member 2.
   
 0.678
LOC113030749
Uncharacterized protein.
     
  0.600
gosr1
Golgi SNAP receptor complex member 1; Involved in transport from the ER to the Golgi apparatus as well as in intra-Golgi transport. It belongs to a super-family of proteins called t-SNAREs or soluble NSF (N-ethylmaleimide-sensitive factor) attachment protein receptor.
     
  0.600
LOC113035578
Ubiquinol-cytochrome c reductase, complex III subunit VII.
     
  0.557
LOC113022198
Cytochrome c-1.
     
  0.557
LOC113025757
Ubiquinol-cytochrome c reductase, complex III subunit X.
     
 0.556
ENSACLP00000012076
Mitochondrial ribosomal protein L34.
     
 0.537
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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