STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113028306Retinal G protein coupled receptor b. (293 aa)    
Predicted Functional Partners:
VSX2
Visual system homeobox 2.
      
 0.522
myb
V-myb avian myeloblastosis viral oncogene homolog.
      
 0.495
ENSACLP00000035735
Collagen, type I, alpha 2.
     
 0.490
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.488
CXCL8-4
Interleukin-8; Belongs to the intercrine alpha (chemokine CxC) family.
  
 
  0.488
LOC113007171
Uncharacterized protein.
      
 0.413
ENSACLP00000034877
Opsin 8, group member c.
      
 0.413
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.