STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
LOC113027085Cryptochrome circadian regulator 1b. (570 aa)    
Predicted Functional Partners:
per1
Period circadian clock 1b.
   
 0.856
timeless
Timeless circadian clock.
    
 0.843
ENSACLP00000009529
Period circadian clock 3.
   
 0.829
PER2
Period circadian regulator 2.
   
 0.829
LOC113009964
Period circadian clock 2.
   
 0.829
ENSACLP00000015166
Neuronal PAS domain protein 2.
    
 0.828
ENSACLP00000015921
Clock circadian regulator b.
    
 0.824
CLOCK
Clock circadian regulator a.
    
 0.824
arntl
Aryl hydrocarbon receptor nuclear translocator-like 1a.
   
 0.822
ARNTL2
Aryl hydrocarbon receptor nuclear translocator like 2.
   
 0.812
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.