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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
ENSACLP00000006519Gem (nuclear organelle) associated protein 6. (169 aa)    
Predicted Functional Partners:
ENSACLP00000025206
Gem (nuclear organelle) associated protein 7.
    
 0.988
ddx20
DEAD (Asp-Glu-Ala-Asp) box polypeptide 20; Belongs to the DEAD box helicase family.
    
 0.987
gemin4
Gem (nuclear organelle) associated protein 4.
    
 0.958
strap
Serine/threonine kinase receptor associated protein.
    
 
 0.919
ENSACLP00000010695
Survival of motor neuron 1, telomeric.
    
 0.910
gemin5
Gem (nuclear organelle) associated protein 5.
    
 0.896
LOC113007098
Uncharacterized protein.
    
 0.862
ENSACLP00000023721
Small nuclear ribonucleoprotein polypeptide F.
    
  0.769
ENSACLP00000036553
Small nuclear ribonucleoprotein E; Associated with the spliceosome snRNP U1, U2, U4/U6 and U5. Belongs to the snRNP Sm proteins family.
    
 0.751
snrpb
Small nuclear ribonucleoprotein-associated protein.
    
 0.644
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.