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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
edaEctodysplasin A; Belongs to the tumor necrosis factor family. (372 aa)    
Predicted Functional Partners:
edar
Ectodysplasin A receptor.
     
 0.869
LOC113022754
Tankyrase_bdg_C domain-containing protein.
    
  0.650
ENSACLP00000008297
DUF4062 domain-containing protein.
    
  0.546
LOC113022203
C1q domain-containing protein.
    
  0.511
rptor
Regulatory associated protein of MTOR, complex 1.
    
 0.458
LOC113015524
Uncharacterized protein.
    
  0.443
setdb1
SET domain bifurcated histone lysine methyltransferase 1b.
    
  0.443
RPS27A
Ribosomal protein S27a.
    
  0.437
mlst8
MTOR associated protein, LST8 homolog (S. cerevisiae).
    
  0.434
det1
DET1 partner of COP1 E3 ubiquitin ligase.
    
  0.434
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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