Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
ogfod12-oxoglutarate and iron-dependent oxygenase domain containing 1. (577 aa)    
Predicted Functional Partners:
rps23
Ribosomal protein S23; Belongs to the universal ribosomal protein uS12 family.
  
 0.990
sycp3
Synaptonemal complex protein 3.
   
 
 0.964
abcf3
ATP-binding cassette, sub-family F (GCN20), member 3.
  
   0.814
ENSACLP00000001083
GCN1 activator of EIF2AK4.
   
 
 0.804
srebf2
Sterol regulatory element binding transcription factor 2.
   
 
 0.768
srebf1
Sterol regulatory element binding transcription factor 1.
   
 
 0.768
l3hypdh
Trans-L-3-hydroxyproline dehydratase.
    
  0.766
crym
Crystallin, mu.
    
  0.753
psmd14
Proteasome 26S subunit, non-ATPase 14.
  
   0.746
LOC113016274
Coproporphyrinogen oxidase.
   
  
 0.726
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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