STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
poc5POC5 centriolar protein homolog (Chlamydomonas). (574 aa)    
Predicted Functional Partners:
cetn3
Centrin 3.
    
 
 0.924
wdr53
WD repeat domain 53.
   
    0.765
LOC113035244
Centrin, EF-hand protein, 2.
    
 
 0.739
LOC113031395
Centrin 4.
    
 
 0.739
crppa
CDP-L-ribitol pyrophosphorylase A.
    
 
 0.689
spice1
Spindle and centriole associated protein 1.
      
 0.531
sfi1
SFI1 centrin binding protein.
      
 0.529
ENSACLP00000036924
Centrosomal protein 120.
   
  
 0.526
ENSACLP00000023225
FAM161 centrosomal protein A.
    
 
 0.525
ENSACLP00000023250
Uncharacterized protein.
    
 
 0.525
Your Current Organism:
Astatotilapia calliptera
NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.