LOC113031609 protein (Astatotilapia calliptera)

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

LOC113031609

Uncharacterized protein. (867 aa)

Predicted Functional Partners:

atp5f1d

0.985

atp5po

0.985

atp5f1c

0.985

atp5f1a

0.964

LOC113033154

0.964

atp5pb

0.943

LOC113021030

0.921

LOC113007670

0.921

ATP6V0C

0.921

atp6v0b

0.921

Your Current Organism:

Astatotilapia calliptera

NCBI taxonomy Id: 8154
Other names: A. calliptera, Ctenochromis callipterus, Haplochromis calliptera, Haplochromis callipterus, eastern happy

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
ATP6V0C	LOC113007670	ENSACLP00000015403	ENSACLP00000013439	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	0.445
ATP6V0C	LOC113021030	ENSACLP00000015403	ENSACLP00000011435	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.886
ATP6V0C	LOC113031609	ENSACLP00000015403	ENSACLP00000006587	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	Uncharacterized protein.	0.921
ATP6V0C	LOC113033154	ENSACLP00000015403	ENSACLP00000019863	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.994
ATP6V0C	atp5f1a	ENSACLP00000015403	ENSACLP00000000417	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.994
ATP6V0C	atp5f1c	ENSACLP00000015403	ENSACLP00000020680	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase subunit gamma.	0.997
ATP6V0C	atp5f1d	ENSACLP00000015403	ENSACLP00000005842	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase F1 subunit delta.	0.997
ATP6V0C	atp5pb	ENSACLP00000015403	ENSACLP00000039211	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase peripheral stalk-membrane subunit b.	0.979
ATP6V0C	atp5po	ENSACLP00000015403	ENSACLP00000010565	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATP synthase peripheral stalk subunit OSCP.	0.997
ATP6V0C	atp6v0b	ENSACLP00000015403	ENSACLP00000021761	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	ATPase H+ transporting V0 subunit b; Belongs to the V-ATPase proteolipid subunit family.	0.999
LOC113007670	ATP6V0C	ENSACLP00000013439	ENSACLP00000015403	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.445
LOC113007670	LOC113021030	ENSACLP00000013439	ENSACLP00000011435	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.445
LOC113007670	LOC113031609	ENSACLP00000013439	ENSACLP00000006587	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	Uncharacterized protein.	0.921
LOC113007670	LOC113033154	ENSACLP00000013439	ENSACLP00000019863	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.997
LOC113007670	atp5f1a	ENSACLP00000013439	ENSACLP00000000417	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase subunit alpha; Produces ATP from ADP in the presence of a proton gradient across the membrane.	0.997
LOC113007670	atp5f1c	ENSACLP00000013439	ENSACLP00000020680	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase subunit gamma.	0.999
LOC113007670	atp5f1d	ENSACLP00000013439	ENSACLP00000005842	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase F1 subunit delta.	0.998
LOC113007670	atp5pb	ENSACLP00000013439	ENSACLP00000039211	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase peripheral stalk-membrane subunit b.	0.997
LOC113007670	atp5po	ENSACLP00000013439	ENSACLP00000010565	ATP synthase membrane subunit c locus 2; Belongs to the ATPase C chain family.	ATP synthase peripheral stalk subunit OSCP.	0.998
LOC113021030	ATP6V0C	ENSACLP00000011435	ENSACLP00000015403	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	V-type proton ATPase proteolipid subunit; Proton-conducting pore forming subunit of the membrane integral V0 complex of vacuolar ATPase. V-ATPase is responsible for acidifying a variety of intracellular compartments in eukaryotic cells.	0.886